CDS

Accession Number TCMCG017C32217
gbkey CDS
Protein Id OMO57925.1
Location join(50424..50525,51317..51478,51570..51657,51778..52008,52153..52320,52559..52752,52841..52924,53033..53152,53230..53359,53512..53672,54330..54359,54604..54680,55479..55592,56953..57025,57193..57279,57408..57545,57656..57858,58297..58459,58597..58712,59244..59335,59923..60108,60201..60281,61474..61646,61763..61957)
GeneID InterPro:IPR001841
Organism Corchorus olitorius
locus_tag COLO4_34990

Protein

Length 1055aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01022473.1
Definition Zinc finger, RING-type [Corchorus olitorius]
Locus_tag COLO4_34990

EGGNOG-MAPPER Annotation

COG_category O
Description E3 ubiquitin-protein ligase BRE1-like
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10696        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006513        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009965        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010016        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010162        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010390        [VIEW IN EMBL-EBI]
GO:0010431        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016574        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0021700        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0022611        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032504        [VIEW IN EMBL-EBI]
GO:0033523        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0042803        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046983        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048366        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048609        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071695        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1905392        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAAGCTCAGAATCGGACGAACCAGAGAAGAAGAGGCCGCATTTGGATTCTCCTACCATGGCCCGTAACTCTTCAACTTCTCCCAACCATGCCAACGCTGTTGACGCTGCAGTTCTCCAGTACCAGAATCAAAAACTCGTCCAGCAATTAGATGTTCAGAAACATGAGTTGCATGATCTTGAAACCAAAATTAAAGAATTAAAAGACAGGCAAAGCTCTTATGATGATATGTTGATAAGTTTGAATCAACTATGGAATCTGTTGGTTGATGATTTGATCCTCCTTGGTGTACGAGCTGGAGGAGGCCATAATGCTTTAGAAACCTTGGACCGTGGAGACACTTCGCGAGATTCTATCCCATCATGCCCTGTGGAGGAGATGTTTCTTTGTAGGCTTCTAGAAAGAGATTCTATCGACTGTAGTGACAATGATGCAATTGCAAATTATGTTGAACAAGTCCTATCTTCTCGTCATTCATCCACTATGGAGTTGCTAAAATCTCTAGAGGATACAATTGCTGCTGAGAGTGTGAAAACTGAGAGCATGGCTCTTGCATTGCAGGGAAATATATCTGCTGAAGACAACATCATGCAGCTATCCAAGATTGATGATATGATGAAAGAGGAGGCTAAGAACTTTCGTGACGTTATTGACGCTCTACACTTGAAGCATAAAGAATATACTGATAGGATTCAAGTATATAGAAGCAGCCATTCAACTGACCAATCTGAGATTAAACGTCTTCAAGGTGACCTGGAAGAGATTATGGCTGAACTTGAACAAAGCAGAAGAAAATTAGTTAATCTGGGAATGCAGAAGAATGTAGCATCTGGGATGCATGCATCTACTCAAGTTGCCGCTAATGGCACCTTGTCACCGGAGAAGACTGCAGATAAAACAAGGGGCTTGCGGGAGATAAAGGATTCAATTGAGGAGGCAAAGACAGTGGCAGAAGATCGACTTAAAGAACTTCAAGATGCACTGCAGCAGAACCTAATCTATTCAAAACAATTACAGGATCTTCAGAATGAACTCAAGGATGACAAATTTGTACAATCGTCTCGACTGTACACTTTGTTAAGTGATCAACTCCAGCATTGGAATGCTGAACTGGGACAATACAAAGCACTCACTGATACTCTGCAGACTGACGGGTTTCTTGTCACGAGGAGGGAGAAGGAACTGAATCTAAAAGCTGAGTCAGCTGATGCTGCTAGAAATACAATTGATAATGCTGATTCTAGAATTGAAGAGCTGGAGTTGCAGCTCCAAAAGTGGAGAAATGACATTAAAGCCGAATTTCGTGTAATGGCGTCGGCTCTGTCCAAGGAAATGGGAATGATGGAAGCTCAGTTGTCTCGCTGGAAGGAGACTGCGCATGAAGCAATTTCCTTACGGCAAGAAACTGAGTCGTTAAAAGCTTTGTTAAGTGATAAGATTGTGGAAATCAAATCTCTTAAGGGTCTGATTGAGAAATTGCAGAAGGAAAAATTGGAGCTGCAAAATTTCTTGGACGTGTATGGCCAAGAAGGCTATGATAATAGTCTGGAACTAAGAGTGAAGGCTGCCAATGAGGCGGAGGCTGCTTGTCAAGAAAGGCTTTCTGTTGCTGAAGCTGAAATAGCTGAGTTAAGAGCTAAACTTGATGCTTCTGAGAGGGATGTTTTGGAGCTCACAGAGGCTATTAAAAGTAAAGATCGAGAGTCAGAGACATACATTTCTGAAATTGAGACTATTGGCCAGGCATATGAAGATATGCAGACACAGAACCAGCATCTGTTGCATCAGATGACAGAAAGGGATGACTACAATATTAAGCTTGTCTCTGAGAGTGTAAAGACAAAGCAGGCATATAATTTATTTCTCTCTGAGAAGCAGACATTGGCAAAGCAACTTCAGCAGGTCAATTCATCAATTGAATCCGTAAAAATGAGGATTACACACAATGAGGAACAGATCAAAGTTTGTTTGACTGATGCTATTAAATCTACTCAAGAGGACAGACATGTTATGATAAGTCTTGAAACTGCAAAGTGGGAGTTGGCAGATGCTGAGAAGGAATTGAAGTGGCTTAAATCTGCTGCAACATCTTCTGAGAAGGACTATGAGCAGCTCCAGCGGAAGGTGGATGAACTCCAAGTGAAGTTGGATAAGGAGCGAAGCCAAAGGAAGAAGCTTGAGGAAGAGCTTACGGAACTAAATAGCAAGGCTGCTGAGCTGAGTTCTGAAACTGGAGAGACGGCAATACGGAAGCTCCAGGATGAAATAAAAAATTGCAAGAATATTCTAAAATGTGGTGTGTGTTTTGACCGGCCAAAGGAGGTTGTAATTGTCAAATGCTATCATCTATTTTGCAATCCATGTATACAGAGAAATTTAGAGATACGACACCGAAAATGCCCTGGTTGTGGAACTGCATTTGGTCAGAATGATGTTAGTTCGAGTTCGAGGAAAGCTTTGGATACTGAAAAAAGTTTAACTAAGGGTTTCACCGAGTTTTATCGGAGATTGAAGGTGGGAAGCATGAAAGTTTTCACTACTGAACCCACCAGCAAGAGTAAATGTTTAATCCATCTGTCACCAAAGAAAAGGAATGCTGCTGGGATTCGTGTGTCCTTGCTTGAAGCTCCTGTGCTTTGGGCTGGTAGGCTTTGCATTTACTATGCACTCTTGAAGGCTGGTTTAGCTGGATCTCAATCTAACCCTCTTGTCTCAGAGCTGGAGAGTGGAGTTGGTATTGGTGAGTCAGGTGATTTGGGGTTCTCTAAGTGGTTGGAGAATATTCAAGGGAAACCAGACAAGGAAGCAGCCGACAAAAGAAAGTTAGTTAGTAAATGGCATCCCACCACGAAAGGCACACTCAAAAGGAACTACAGGGTGCCATCCAAATCAGAAGGCAGGCGGCTACTTAAAGCGGTTGCATCCTTACTGTCAGATGATGATCATTTTACTGATGCCACTTCCCACAAGGGTTGTCAGATCAGGAGGGAGAGTGCTCACGGTGAAAGTGTCTGCTGCAACAATGTAAGAGCTCTGTTTGATGAGCTTCCTACTCCTCACCTTACAGTGGAAATTACGCCGTTTCCAGCAGGGCCTCTCACTGAAAAAGATTACATCAAAGCTGAGAAACTGGAGAGGGTTCTACGATCCGGTCCTTCTGTTTAA
Protein:  
MESSESDEPEKKRPHLDSPTMARNSSTSPNHANAVDAAVLQYQNQKLVQQLDVQKHELHDLETKIKELKDRQSSYDDMLISLNQLWNLLVDDLILLGVRAGGGHNALETLDRGDTSRDSIPSCPVEEMFLCRLLERDSIDCSDNDAIANYVEQVLSSRHSSTMELLKSLEDTIAAESVKTESMALALQGNISAEDNIMQLSKIDDMMKEEAKNFRDVIDALHLKHKEYTDRIQVYRSSHSTDQSEIKRLQGDLEEIMAELEQSRRKLVNLGMQKNVASGMHASTQVAANGTLSPEKTADKTRGLREIKDSIEEAKTVAEDRLKELQDALQQNLIYSKQLQDLQNELKDDKFVQSSRLYTLLSDQLQHWNAELGQYKALTDTLQTDGFLVTRREKELNLKAESADAARNTIDNADSRIEELELQLQKWRNDIKAEFRVMASALSKEMGMMEAQLSRWKETAHEAISLRQETESLKALLSDKIVEIKSLKGLIEKLQKEKLELQNFLDVYGQEGYDNSLELRVKAANEAEAACQERLSVAEAEIAELRAKLDASERDVLELTEAIKSKDRESETYISEIETIGQAYEDMQTQNQHLLHQMTERDDYNIKLVSESVKTKQAYNLFLSEKQTLAKQLQQVNSSIESVKMRITHNEEQIKVCLTDAIKSTQEDRHVMISLETAKWELADAEKELKWLKSAATSSEKDYEQLQRKVDELQVKLDKERSQRKKLEEELTELNSKAAELSSETGETAIRKLQDEIKNCKNILKCGVCFDRPKEVVIVKCYHLFCNPCIQRNLEIRHRKCPGCGTAFGQNDVSSSSRKALDTEKSLTKGFTEFYRRLKVGSMKVFTTEPTSKSKCLIHLSPKKRNAAGIRVSLLEAPVLWAGRLCIYYALLKAGLAGSQSNPLVSELESGVGIGESGDLGFSKWLENIQGKPDKEAADKRKLVSKWHPTTKGTLKRNYRVPSKSEGRRLLKAVASLLSDDDHFTDATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHLTVEITPFPAGPLTEKDYIKAEKLERVLRSGPSV